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arabidopsis thaliana ath1 affymetrix platform  (Thermo Fisher)


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    Thermo Fisher arabidopsis thaliana ath1 affymetrix platform
    Six possible logical gene‐gene relationships. Every point in the plot is a microarray experiment performed in the <t>ATH1</t> Affymetrix platform. The x ‐ and y ‐axes represent log2 normalized gene expression values. Sparsely populated quadrants are highlighted with orange. (a, d) Symmetric relationships. (b, c, e, f) Asymmetric relationships. (a) ATY2 equivalent PHOT2. (b) AP3 low ⇒ LTP12 low. (c) AP3 high ⇒ FRU low. (d) ATY1 opposite ATY2. (e) GDH2 low ⇒ SHW1 high. (f) ATS1 high ⇒ OLEO2 high
    Arabidopsis Thaliana Ath1 Affymetrix Platform, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ath1+affymetrix+platform/pmc06508763-45-20-23
    Average 86 stars, based on 1 article reviews
    arabidopsis thaliana ath1 affymetrix platform - by Bioz Stars, 2026-09
    86/100 stars

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    1) Product Images from "Identification of gene expression logical invariants in Arabidopsis"

    Article Title: Identification of gene expression logical invariants in Arabidopsis

    Journal: Plant Direct

    doi: 10.1002/pld3.123

    Six possible logical gene‐gene relationships. Every point in the plot is a microarray experiment performed in the ATH1 Affymetrix platform. The x ‐ and y ‐axes represent log2 normalized gene expression values. Sparsely populated quadrants are highlighted with orange. (a, d) Symmetric relationships. (b, c, e, f) Asymmetric relationships. (a) ATY2 equivalent PHOT2. (b) AP3 low ⇒ LTP12 low. (c) AP3 high ⇒ FRU low. (d) ATY1 opposite ATY2. (e) GDH2 low ⇒ SHW1 high. (f) ATS1 high ⇒ OLEO2 high
    Figure Legend Snippet: Six possible logical gene‐gene relationships. Every point in the plot is a microarray experiment performed in the ATH1 Affymetrix platform. The x ‐ and y ‐axes represent log2 normalized gene expression values. Sparsely populated quadrants are highlighted with orange. (a, d) Symmetric relationships. (b, c, e, f) Asymmetric relationships. (a) ATY2 equivalent PHOT2. (b) AP3 low ⇒ LTP12 low. (c) AP3 high ⇒ FRU low. (d) ATY1 opposite ATY2. (e) GDH2 low ⇒ SHW1 high. (f) ATS1 high ⇒ OLEO2 high

    Techniques Used: Microarray, Expressing

    Comparison of Boolean network between GSE69995 and Pandey 2018 dataset. Every point in the plot is a probeset ID in the ATH1 Affymetrix platform. The x ‐ and y ‐axes represent log2 count of the respective logical relationships. x = y is plotted with a red line. (a, d) Symmetric relationships. (b, c, e, f) Asymmetric relationships. (a) A equivalent X. (b) A low ⇒ X low. (c) A high ⇒ X low. (d) A opposite X. (e) A low ⇒ X high. (f) A high ⇒ X high. Our approach discovered more significant logical relationships than the previously published dataset in all other cases except A low ⇒ X high. Gene A and Gene X are candidate probeset IDs in each dataset
    Figure Legend Snippet: Comparison of Boolean network between GSE69995 and Pandey 2018 dataset. Every point in the plot is a probeset ID in the ATH1 Affymetrix platform. The x ‐ and y ‐axes represent log2 count of the respective logical relationships. x = y is plotted with a red line. (a, d) Symmetric relationships. (b, c, e, f) Asymmetric relationships. (a) A equivalent X. (b) A low ⇒ X low. (c) A high ⇒ X low. (d) A opposite X. (e) A low ⇒ X high. (f) A high ⇒ X high. Our approach discovered more significant logical relationships than the previously published dataset in all other cases except A low ⇒ X high. Gene A and Gene X are candidate probeset IDs in each dataset

    Techniques Used:

    Data normalization and Boolean implication. In GSE69995 and Pandey 2018 datasets every point in the plot is a microarray experiment in the ATH1 Affymetrix platform. In Zhuo RNASeq datasets every point is an RNASeq experiment in a Arabidopsis tissue sample. The x ‐ and y ‐axes represent log2 normalized expression values. Root and flower tissue samples are highlighted with dark blue and red, respectively. (a) GSE69995: no relationship, some flower samples may express high levels of FRU; Pandey 2018, Zhuo RNASeq: AP3 high ⇒ FRU low, FRU is expressed in roots and AP3 is expressed in flower samples. (b) GSE69995: COL4 low ⇒ ARK1 high; ARK1 is expressed in root samples; Pandey 2018, Zhuo RNASeq: COL4 low ⇒ ARK1 low, ARK1 is not expressed in root samples
    Figure Legend Snippet: Data normalization and Boolean implication. In GSE69995 and Pandey 2018 datasets every point in the plot is a microarray experiment in the ATH1 Affymetrix platform. In Zhuo RNASeq datasets every point is an RNASeq experiment in a Arabidopsis tissue sample. The x ‐ and y ‐axes represent log2 normalized expression values. Root and flower tissue samples are highlighted with dark blue and red, respectively. (a) GSE69995: no relationship, some flower samples may express high levels of FRU; Pandey 2018, Zhuo RNASeq: AP3 high ⇒ FRU low, FRU is expressed in roots and AP3 is expressed in flower samples. (b) GSE69995: COL4 low ⇒ ARK1 high; ARK1 is expressed in root samples; Pandey 2018, Zhuo RNASeq: COL4 low ⇒ ARK1 low, ARK1 is not expressed in root samples

    Techniques Used: Microarray, Expressing

    Related Articles

    Transcriptomics:

    Article Title: Identification of gene expression logical invariants in Arabidopsis
    Article Snippet: .. ATH1 Affymetrix platform was extremely popular for initial transcriptomics studies within the Arabidopsis community. ..



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    Six possible logical gene‐gene relationships. Every point in the plot is a microarray experiment performed in the ATH1 Affymetrix platform. The x ‐ and y ‐axes represent log2 normalized gene expression values. Sparsely populated quadrants are highlighted with orange. (a, d) Symmetric relationships. (b, c, e, f) Asymmetric relationships. (a) ATY2 equivalent PHOT2. (b) AP3 low ⇒ LTP12 low. (c) AP3 high ⇒ FRU low. (d) ATY1 opposite ATY2. (e) GDH2 low ⇒ SHW1 high. (f) ATS1 high ⇒ OLEO2 high

    Journal: Plant Direct

    Article Title: Identification of gene expression logical invariants in Arabidopsis

    doi: 10.1002/pld3.123

    Figure Lengend Snippet: Six possible logical gene‐gene relationships. Every point in the plot is a microarray experiment performed in the ATH1 Affymetrix platform. The x ‐ and y ‐axes represent log2 normalized gene expression values. Sparsely populated quadrants are highlighted with orange. (a, d) Symmetric relationships. (b, c, e, f) Asymmetric relationships. (a) ATY2 equivalent PHOT2. (b) AP3 low ⇒ LTP12 low. (c) AP3 high ⇒ FRU low. (d) ATY1 opposite ATY2. (e) GDH2 low ⇒ SHW1 high. (f) ATS1 high ⇒ OLEO2 high

    Article Snippet: Both the Yadav‐2014 and Benfey dataset use specific reporter lines and purify specific cell types and profile them using the Arabidopsis thaliana ATH1 Affymetrix platform.

    Techniques: Microarray, Expressing

    Comparison of Boolean network between GSE69995 and Pandey 2018 dataset. Every point in the plot is a probeset ID in the ATH1 Affymetrix platform. The x ‐ and y ‐axes represent log2 count of the respective logical relationships. x = y is plotted with a red line. (a, d) Symmetric relationships. (b, c, e, f) Asymmetric relationships. (a) A equivalent X. (b) A low ⇒ X low. (c) A high ⇒ X low. (d) A opposite X. (e) A low ⇒ X high. (f) A high ⇒ X high. Our approach discovered more significant logical relationships than the previously published dataset in all other cases except A low ⇒ X high. Gene A and Gene X are candidate probeset IDs in each dataset

    Journal: Plant Direct

    Article Title: Identification of gene expression logical invariants in Arabidopsis

    doi: 10.1002/pld3.123

    Figure Lengend Snippet: Comparison of Boolean network between GSE69995 and Pandey 2018 dataset. Every point in the plot is a probeset ID in the ATH1 Affymetrix platform. The x ‐ and y ‐axes represent log2 count of the respective logical relationships. x = y is plotted with a red line. (a, d) Symmetric relationships. (b, c, e, f) Asymmetric relationships. (a) A equivalent X. (b) A low ⇒ X low. (c) A high ⇒ X low. (d) A opposite X. (e) A low ⇒ X high. (f) A high ⇒ X high. Our approach discovered more significant logical relationships than the previously published dataset in all other cases except A low ⇒ X high. Gene A and Gene X are candidate probeset IDs in each dataset

    Article Snippet: Both the Yadav‐2014 and Benfey dataset use specific reporter lines and purify specific cell types and profile them using the Arabidopsis thaliana ATH1 Affymetrix platform.

    Techniques:

    Data normalization and Boolean implication. In GSE69995 and Pandey 2018 datasets every point in the plot is a microarray experiment in the ATH1 Affymetrix platform. In Zhuo RNASeq datasets every point is an RNASeq experiment in a Arabidopsis tissue sample. The x ‐ and y ‐axes represent log2 normalized expression values. Root and flower tissue samples are highlighted with dark blue and red, respectively. (a) GSE69995: no relationship, some flower samples may express high levels of FRU; Pandey 2018, Zhuo RNASeq: AP3 high ⇒ FRU low, FRU is expressed in roots and AP3 is expressed in flower samples. (b) GSE69995: COL4 low ⇒ ARK1 high; ARK1 is expressed in root samples; Pandey 2018, Zhuo RNASeq: COL4 low ⇒ ARK1 low, ARK1 is not expressed in root samples

    Journal: Plant Direct

    Article Title: Identification of gene expression logical invariants in Arabidopsis

    doi: 10.1002/pld3.123

    Figure Lengend Snippet: Data normalization and Boolean implication. In GSE69995 and Pandey 2018 datasets every point in the plot is a microarray experiment in the ATH1 Affymetrix platform. In Zhuo RNASeq datasets every point is an RNASeq experiment in a Arabidopsis tissue sample. The x ‐ and y ‐axes represent log2 normalized expression values. Root and flower tissue samples are highlighted with dark blue and red, respectively. (a) GSE69995: no relationship, some flower samples may express high levels of FRU; Pandey 2018, Zhuo RNASeq: AP3 high ⇒ FRU low, FRU is expressed in roots and AP3 is expressed in flower samples. (b) GSE69995: COL4 low ⇒ ARK1 high; ARK1 is expressed in root samples; Pandey 2018, Zhuo RNASeq: COL4 low ⇒ ARK1 low, ARK1 is not expressed in root samples

    Article Snippet: Both the Yadav‐2014 and Benfey dataset use specific reporter lines and purify specific cell types and profile them using the Arabidopsis thaliana ATH1 Affymetrix platform.

    Techniques: Microarray, Expressing

    Six possible logical gene‐gene relationships. Every point in the plot is a microarray experiment performed in the ATH1 Affymetrix platform. The x ‐ and y ‐axes represent log2 normalized gene expression values. Sparsely populated quadrants are highlighted with orange. (a, d) Symmetric relationships. (b, c, e, f) Asymmetric relationships. (a) ATY2 equivalent PHOT2. (b) AP3 low ⇒ LTP12 low. (c) AP3 high ⇒ FRU low. (d) ATY1 opposite ATY2. (e) GDH2 low ⇒ SHW1 high. (f) ATS1 high ⇒ OLEO2 high

    Journal: Plant Direct

    Article Title: Identification of gene expression logical invariants in Arabidopsis

    doi: 10.1002/pld3.123

    Figure Lengend Snippet: Six possible logical gene‐gene relationships. Every point in the plot is a microarray experiment performed in the ATH1 Affymetrix platform. The x ‐ and y ‐axes represent log2 normalized gene expression values. Sparsely populated quadrants are highlighted with orange. (a, d) Symmetric relationships. (b, c, e, f) Asymmetric relationships. (a) ATY2 equivalent PHOT2. (b) AP3 low ⇒ LTP12 low. (c) AP3 high ⇒ FRU low. (d) ATY1 opposite ATY2. (e) GDH2 low ⇒ SHW1 high. (f) ATS1 high ⇒ OLEO2 high

    Article Snippet: ATH1 Affymetrix platform was extremely popular for initial transcriptomics studies within the Arabidopsis community.

    Techniques: Microarray, Expressing

    Comparison of Boolean network between GSE69995 and Pandey 2018 dataset. Every point in the plot is a probeset ID in the ATH1 Affymetrix platform. The x ‐ and y ‐axes represent log2 count of the respective logical relationships. x = y is plotted with a red line. (a, d) Symmetric relationships. (b, c, e, f) Asymmetric relationships. (a) A equivalent X. (b) A low ⇒ X low. (c) A high ⇒ X low. (d) A opposite X. (e) A low ⇒ X high. (f) A high ⇒ X high. Our approach discovered more significant logical relationships than the previously published dataset in all other cases except A low ⇒ X high. Gene A and Gene X are candidate probeset IDs in each dataset

    Journal: Plant Direct

    Article Title: Identification of gene expression logical invariants in Arabidopsis

    doi: 10.1002/pld3.123

    Figure Lengend Snippet: Comparison of Boolean network between GSE69995 and Pandey 2018 dataset. Every point in the plot is a probeset ID in the ATH1 Affymetrix platform. The x ‐ and y ‐axes represent log2 count of the respective logical relationships. x = y is plotted with a red line. (a, d) Symmetric relationships. (b, c, e, f) Asymmetric relationships. (a) A equivalent X. (b) A low ⇒ X low. (c) A high ⇒ X low. (d) A opposite X. (e) A low ⇒ X high. (f) A high ⇒ X high. Our approach discovered more significant logical relationships than the previously published dataset in all other cases except A low ⇒ X high. Gene A and Gene X are candidate probeset IDs in each dataset

    Article Snippet: ATH1 Affymetrix platform was extremely popular for initial transcriptomics studies within the Arabidopsis community.

    Techniques:

    Data normalization and Boolean implication. In GSE69995 and Pandey 2018 datasets every point in the plot is a microarray experiment in the ATH1 Affymetrix platform. In Zhuo RNASeq datasets every point is an RNASeq experiment in a Arabidopsis tissue sample. The x ‐ and y ‐axes represent log2 normalized expression values. Root and flower tissue samples are highlighted with dark blue and red, respectively. (a) GSE69995: no relationship, some flower samples may express high levels of FRU; Pandey 2018, Zhuo RNASeq: AP3 high ⇒ FRU low, FRU is expressed in roots and AP3 is expressed in flower samples. (b) GSE69995: COL4 low ⇒ ARK1 high; ARK1 is expressed in root samples; Pandey 2018, Zhuo RNASeq: COL4 low ⇒ ARK1 low, ARK1 is not expressed in root samples

    Journal: Plant Direct

    Article Title: Identification of gene expression logical invariants in Arabidopsis

    doi: 10.1002/pld3.123

    Figure Lengend Snippet: Data normalization and Boolean implication. In GSE69995 and Pandey 2018 datasets every point in the plot is a microarray experiment in the ATH1 Affymetrix platform. In Zhuo RNASeq datasets every point is an RNASeq experiment in a Arabidopsis tissue sample. The x ‐ and y ‐axes represent log2 normalized expression values. Root and flower tissue samples are highlighted with dark blue and red, respectively. (a) GSE69995: no relationship, some flower samples may express high levels of FRU; Pandey 2018, Zhuo RNASeq: AP3 high ⇒ FRU low, FRU is expressed in roots and AP3 is expressed in flower samples. (b) GSE69995: COL4 low ⇒ ARK1 high; ARK1 is expressed in root samples; Pandey 2018, Zhuo RNASeq: COL4 low ⇒ ARK1 low, ARK1 is not expressed in root samples

    Article Snippet: ATH1 Affymetrix platform was extremely popular for initial transcriptomics studies within the Arabidopsis community.

    Techniques: Microarray, Expressing